NEET MDS Lessons
Biochemistry
Polyprotic Acids
• Some acids are polyprotic acids; they can lose more than one proton.
• In this case, the conjugate base is also a weak acid.
• For example: Carbonic acid (H2CO3 ) can lose two protons sequentially.
• Each dissociation has a unique Ka and pKa value.
Ka1 = [H+ ][HCO3 - ] / [H2CO3]
Ka2 = [H+ ][CO3 -2 ] / [HCO3- ]
Note: (The difference between a weak acid and its conjugate base differ is one hydrogen)
PROPERTIES OF TRIACYLGTYCEROLS
1. Hydrolysis : Triacylglycerols undergo stepwise enzymatic hydrolysis to finally liberate free fatty acids and glycerol.
The process of hydrolysis, catalysed by lipases is important for digestion of fat in the gastrointestinal tract and fat mobilization from the adipose tissues.
2. Saponification : The hydrolysis of triacylglycerols by alkali to produce glycerol and soaps is known as saponification.
3.Rancidity: Rancidity is the term used to represent the deterioration of fats and oils resulting in an unpleasant taste. Fats containing unsaturated fatty acids are more susceptible to rancidity.
Hydrolytic rancidity occurs due to partial hydrolysis of triacylglycerols by bacterial enzymes.
Oxidative rancidity is due to oxidation of unsaturated fatty acids.
This results in the formation of unpleasant products such as dicarboxylic acids, aldehydes, ketones etc.
Antioxidants : The substances which can prevent the occurrence of oxidative rancidity are known as antioxidants.
Trace amounts of antioxidants such as tocopherols (vitamin E), hydroquinone, gallic acid and c,-naphthol are added to the commercial preparations of fats and oils to prevent rancidity. Propylgallate, butylatedhydroxyanisole (BHA) and butylated hydroxytoluene (BHT) are the antioxidants used in food preservation.
Lipid peroxidation in vivo: In the living cells, lipids undergo oxidation to produce peroxides and free radicals which can damage the tissue. .
The free radicals are believed to cause inflammatory diseases, ageing, cancer , atherosclerosis etc
Iodine number : lt is defined as the grams (number) of iodine absorbed by 100 g of fat or oil. lodine number is useful to know the relative
unsaturation of fats, and is directly proportional to the content of unsaturated fatty acids
Determination of iodine number will help to know the degree of adulteration of a given oil
Saponification number : lt is defined as the mg (number) of KOH required to hydrolyse (saponify) one gram of fat or oiL
Reichert-Meissl (RM) number: lt is defined as the number of ml 0.1 N KOH required to completely neutralize the soluble volatile fatty acids distilled from 5 g fat. RM number is useful in testing the purity of butter since it contains a good concentration of volatile fatty acids (butyric acid, caproic acid and caprylic acid).
Acid number : lt is defined as the number of mg of KOH required to completely neutralize free fatty acids present in one gram fat or oil. In normal circumstances, refined oils should be free from any free fatty acids.
The amino acids buffer system
Amino acids contain in their molecule both an acidic (− COOH) and a basic (− NH2) group. They can be visualized as existing in the form of a neutral zwitterion in which a hydrogen atom can pass between the carboxyl and amino groups.
By the addition or subtraction of a hydrogen ion to or from the zwitterion, either the cation or anion form will be produced
Thus, when OH− ions are added to the solution of amino acid, they take up H+ from it to form water, and the anion is produced. If H+ ions are added, they are taken up by the zwitterion to produce the cation form. In practice, if NaOH is added, the salt H2N - CH2 - COONa would be formed. and the addition of HCl would result in the formation of amino acid hydrochloride.
Proteins are complex macromolecules composed of amino acids that perform diverse biological functions. Understanding their structure-function relationships is crucial for medical applications and biochemistry.
Levels of Protein Structure
Primary Structure
- Linear sequence of amino acids connected by peptide bonds
- Determines all higher levels of organization
- Coded by DNA sequence
Secondary Structure
- Local folding patterns stabilized by hydrogen bonds
- Alpha helix: Right-handed spiral structure
- Beta sheet: Extended polypeptide chains arranged side by side
- Beta turn: Connects different secondary structural elements
Tertiary Structure
- Three-dimensional folding of entire polypeptide chain
- Stabilized by:
- Hydrogen bonds
- Disulfide bridges
- Van der Waals forces
- Electrostatic interactions
- Hydrophobic interactions
Quaternary Structure
- Assembly of multiple polypeptide subunits
- Present only in proteins with more than one polypeptide chain
- Examples: Hemoglobin (4 subunits), antibodies
Protein Classification
Based on Structure
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Fibrous Proteins
- Elongated, insoluble
- Structural functions
- Examples: Collagen, keratin, elastin
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Globular Proteins
- Compact, soluble
- Functional proteins
- Examples: Enzymes, antibodies, hormones
Based on Composition
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Simple Proteins
- Composed only of amino acids
- Examples: Albumin, globulins
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Conjugated Proteins
- Contain non-protein prosthetic groups
- Glycoproteins: Contain carbohydrates
- Lipoproteins: Contain lipids
- Nucleoproteins: Contain nucleic acids
- Phosphoproteins: Contain phosphate groups
- Metalloproteins: Contain metal ions
COENZYMES
Enzymes may be simple proteins, or complex enzymes.
A complex enzyme contains a non-protein part, called as prosthetic group (co-enzymes).
Coenzymes are heat stable low molecular weight organic compound. The combined form of protein and the co-enzyme are called as holo-enzyme. The heat labile or unstable part of the holo-enzyme is called as apo-enzyme. The apo-enzyme gives necessary three dimensional structures required for the enzymatic chemical reaction.
Co-enzymes are very essential for the biological activities of the enzyme.
Co-enzymes combine loosely with apo-enzyme and are released easily by dialysis. Most of the co-enzymes are derivatives of vitamin B complex
1. Kwashiorkor
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Cause: Severe protein deficiency with adequate or near-adequate calorie intake.
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Typical Age: 1–3 years (post-weaning)
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Clinical Features:
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Edema (due to hypoalbuminemia)
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Moon face and swollen abdomen
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Dermatosis and skin depigmentation
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Fatty liver
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Apathy and irritability
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Key Insight: Protein is lacking, but energy (carbohydrates) may be sufficient.
2. Marasmus
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Cause: Deficiency of both protein and calories
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Typical Age: Infants under 1 year
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Clinical Features:
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Severe wasting and muscle loss
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Prominent ribs and sunken eyes
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No edema
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Alert but irritable
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Key Insight: Total energy deficit leads to extreme emaciation.
Ampholytes, Polyampholytes, pI and Zwitterion
Many substances in nature contain both acidic and basic groups as well as many different types of these groups in the same molecule. (e.g. proteins). These are called ampholytes (one acidic and one basic group) or polyampholytes (many acidic and basic groups). Proteins contains many different amino acids some of which contain ionizable side groups, both acidic and basic. Therefore, a useful term for dealing with the titration of ampholytes and polyampholytes (e.g. proteins) is the isoelectric point, pI. This is described as the pH at which the effective net charge on a molecule is zero.
For the case of a simple ampholyte like the amino acid glycine the pI, when calculated from the Henderson-Hasselbalch equation, is shown to be the average of the pK for the a-COOH group and the pK for the a-NH2 group:
pI = [pKa-(COOH) + pKa-(NH3+)]/2
For more complex molecules such as polyampholytes the pI is the average of the pKa values that represent the boundaries of the zwitterionic form of the molecule. The pI value, like that of pK, is very informative as to the nature of different molecules. A molecule with a low pI would contain a predominance of acidic groups, whereas a high pI indicates predominance of basic groups.