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Biochemistry - NEETMDS- courses
NEET MDS Lessons
Biochemistry

Pepsin

  • Primary enzyme for protein degradation in stomach
  • Optimal pH: 1.5-2.0 (acidic)
  • Secreted as inactive pepsinogen
  • Cleaves proteins into smaller peptides

Histone

  • Protein rich in basic amino acids (lysine and arginine)
  • Packages DNA in chromosomes
  • Forms nucleosomes with DNA
  • Types: H1, H2A, H2B, H3, H4

Casein

  • Example of phosphoprotein
  • Major protein in milk
  • Contains phosphate groups attached to serine residues
  • Forms micelles in milk

Antibodies (Immunoglobulins)

  • Structure composed of 2 long (heavy) & 2 short (light) peptide chains
  • Y-shaped structure
  • Connected by disulfide bonds
  • Variable regions bind to antigens
  • Constant regions determine antibody class

Insulin Receptors

  • Tetrameric glycoprotein
  • Consists of 2 α and 2 β subunits
  • α subunits: Extracellular, insulin-binding
  • β subunits: Transmembrane, tyrosine kinase activity
  • Essential for glucose homeostasis

Collagen

  • Contains triple helix structure
  • Most abundant protein in mammals
  • Composed of three polypeptide chains (tropocollagen)
  • Amino acid sequence: Gly-X-Y (where X is often proline, Y is often hydroxyproline)
  • Provides structural support to tissues

Titration of a weak acid with a strong base

• A weak acid is mostly in its conjugate acid form

• When strong base is added, it removes protons from the solution, more and more acid is in the conjugate base form, and the pH increases

• When the moles of base added equals half the total moles of acid, the weak acid and its conjugate base are in equal amounts. The ratio of CB / WA = 1 and according to the HH equation, pH = pKa + log(1) or pH = pKa.

• If more base is added, the conjugate base form becomes greater till the equivalance point when all of the acid is in the conjugate base form.

PHOSPHOLIPIDS

These are complex or compound lipids containing phosphoric acid, in addition to fatty acids, nitrogenous base and alcohol 

There are two  classes of phospholipids

1. Glycerophospholipids (or phosphoglycerides) that contain glycerol as the alcohol.

2. Sphingophospholipids (or sphingomyelins) that contain sphingosine as the alcohol

Glycerophospholipids

Glycerophospholipids are the major lipids that occur in biological membranes. They consist of glycerol 3-phosphate esterified at its C1 and C2 with fatty acids. Usually, C1 contains a saturated fatty acid while C2 contains an unsaturated fatty acid.

In glycerophospholipids, we refer to the glycerol residue (highlighted red above) as the "glycerol backbone."

Glycerophospholipids are Amphipathic

Glycerophospholipids are sub classified as

1. Phosphatidylethanolamine or cephalin also abbreviated as PE is found in biological membranes and composed of ethanolamine bonded to phosphate group on diglyceride.

 

2. Phosphatidylcholine or lecithin or PC which has chloline bonded with phosphate group and glycerophosphoric acid with different fatty acids like palmitic or hexadecanoic acid, margaric acid, oleic acid. It is a major component of cell membrane and mainly present in egg yolk and soy beans.

3. Phosphatidic acid (phosphatidate) (PA)

It consists of a glycerol with one saturated fatty acid bonded to carbon-1 of glycerol and an unsaturated fatty acid bonded to carbon-2 with a phosphate group bonded to carbon-3.

4.Phosphatidylserine (PS)

This phospholipid contains serine as an organic compound with other main components of phospholipids. Generally it found on the cytosolic side of cell membranes.

5. Phosphoinositides

It is a group of phospholipids which are negatively charged and act as a a minor component in the cytosolic side of eukaryotic cell membranes. On the basis of different number of phosphate groups they can be different types like phosphatidylinositol phosphate (PIP), phosphatidylinositol bisphosphate(PIP2) and phosphatidylinositol trisphosphate (PIP3). PIP, PIP2 and PIP3 and collectively termed as phosphoinositide.

6. Cardiolipin :

lt is so named as it was first isolated from heart muscle. Structurally, a cardiolipin consists of two molecules of phosphatidic acid held by an additional glycerol through phosphate groups. lt is an important component of inner mitochondrial membrane. Cardiolipin is the only phosphoglyceride that possesses antigenic properties.

Enzyme assays measure the activity or concentration of specific enzymes in blood or tissue samples. Elevated or reduced levels often indicate organ dysfunction or cellular damage.

Enzyme Groups & Their Clinical Significance

Enzyme Group Function Clinical Relevance
Oxidoreductases Catalyze oxidation-reduction reactions Liver, cardiac, and muscle injury markers
Transferases Transfer functional groups between molecules Liver and muscle enzymes (e.g., AST, ALT)
Hydrolases Break chemical bonds using water Pancreatic enzymes (e.g., amylase, lipase)
Lyases Break bonds without hydrolysis or oxidation Less commonly used in diagnostics
Isomerases Rearrange molecular structures Rarely used clinically
Ligases Join molecules using ATP Mostly research-based, not routine diagnostics

 

b Oxidation Pathway

Fatty Acid Synthesis

pathway location

mitochondrial matrix

cytosol

acyl carriers (thiols)

Coenzyme-A

phosphopantetheine (ACP) & cysteine

electron acceptors/donor

FAD & NAD+

NADPH

hydroxyl intermediate

L

D

2-C product/donor

acetyl-CoA

malonyl-CoA (& acetyl-CoA)

These are normally non-essential but become essential during stress, illness, or in infants.

Conditionally Essential When Needed
Arginine Growth, trauma, immune stress
Cysteine Liver disease, oxidative stress
Glutamine Critical illness, burns
Tyrosine PKU (phenylketonuria) patients
Proline, Glycine Wound healing, collagen synthesis

Nomenclature for stereoisomers: D and L designations are based on the configuration about the single asymmetric carbon in glyceraldehydes

 

For sugars with more than one chiral center, the D or L designation refers to the asymmetric carbon farthest from the aldehyde or keto group.

Most naturally occurring sugars are D isomers.

D & L sugars are mirror images of one another. They have the same name. For example, D-glucose and L-glucose

Other stereoisomers have unique names, e.g., glucose, mannose, galactose, etc. The number of stereoisomers is 2 n, where n is the number of asymmetric centers. The six-carbon aldoses have 4 asymmetric centers, and thus 16 stereoisomers (8 D-sugars and 8 L-sugars

An aldehyde can react with an alcohol to form a hemiacetal

Similarly a ketone can react with an alcohol to form a hemiketal

 

Pentoses and hexoses can cyclize, as the aldehyde or keto group reacts with a hydroxyl on one of the distal carbons

E.g., glucose forms an intra-molecular hemiacetal by reaction of the aldehyde on C1 with the hydroxyl on C5, forming a six-member pyranose ring, named after the compound pyran

The representations of the cyclic sugars below are called Haworth projections.

 

 

Fructose can form either: 

  • a six-member pyranose ring, by reaction of the C2 keto group with the hydroxyl on C6
  • a 5-member furanose ring, by reaction of the C2 keto group with the hydroxyl on C5.

 

 

Cyclization of glucose produces a new asymmetric center at C1, with the two stereoisomers called anomers, α & β

 

Haworth projections represent the cyclic sugars as having essentially planar rings, with the OH at the anomeric C1 extending either:

  • below the ring (α)
  • above the ring (β).

Because of the tetrahedral nature of carbon bonds, the cyclic form of pyranose sugars actually assume a "chair" or "boat" configuration, depending on the sugar

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